ID转换工具 Shiny App

该工具主要用于将基于Uniprot数据库中的蛋白id转换为gene symbol id ，并同时满足于其他类型的id转换。

可查询的数据源id: 63个 ; 目标转换数据源id: 149个 ; 常见查询物种: 16个

可选物种拉丁名:

Tips:

1、查询id默认'UniProt Accession',基于Uniprot数据库建库的蛋白id，方便以MS表中蛋白列查询。

2、要转换的目标数据库id可多选，单次查询最多选择4个，最少选择1个。常见转换id为gene symbol/Ensembl Gene ID。

3、查询前确认物种是否匹配，物种默认选择'Homo sapiens'。

4、查询id条目每行一个，单次最多查询1000条。

5、下载转换后的结果数据时，暂不支持改变下载结果文件名称。

在线可用的蛋白ID转换网站:

bioDBnet 网站提供了常见的 ID 转换的选项, 类型全面。

Uniprot ID mapping 可以很方便地把 ID 转换为其他 ID 类型, 所包含的类型十分全面。

Database used in this app

• Identifier for affymetrix probe set {Affy ID}
• Identifier for the Agilent arrays {Agilent ID}
• Identifier for the Cryptosporidium Genome Resource, a part of ApiDB which is a portal for accessing genome-scale datasets associated with the protozoan parasites in the phlyum Apicomplexa {ApiDB_CryptoDB ID}
• Identifier for Allergome, which contains information on allergenic molecules causing allergic diseases like asthma, rhinitis, urticaria, anaphylaxis {Allergome Code}
• Identifier for BIND, the Biomolecular Interaction Network Database {BIND ID}
• Identifier for BioCyc, a collection of pathway/genome databases {BioCyc ID}
• Identifier for the Consensus Coding DNA Sequence project, an effort to identify consistently annotated, high quality human and mouse protein coding regions {CCDS ID}
• Identifier for Chemical Entities of Biological Interest (ChEBI) is a dictionary of molecular entities focused on 'small' chemical compounds. {ChEBI ID}
• Identifier for CleanEx, a database that provides access to public gene expression data {CleanEx ID}
• Identifier for the CodeLink arrays from GE Healthcare {CodeLink ID}
• term names for Clusters of Orthologous Groups of proteins {COG Term}
• mutation Identifier for COSMIC, a Catalogue Of Somatic Mutations In Cancer {COSMIC ID}
• Identifier for the Comprehensive Yeast Genome Database {CYGD ID}
• Drug Indentification Number for the Health Canada Drug Product Database {DPD DIN}
• Identifier for the Single Nucleotide Polymorphism database {dbSNP ID}
• Identifier for DictyBase, a Dictyostelium discoideum genomic database {dictyBase ID}
• Identifier for the nodes/proteins in Database of Interacting Proteins {DIP ID}
• Identifier for the Database of Protein Disorder {DisProt ID}
• A resource that combines drug data with comprehensive drug target information {DrugBank Drug *}
• The Enzyme Commission number is a numerical classification scheme for enzymes {EC Number}
• Identifier for EchoBASE, an integrated post-genomic database for Escherichia coli {EchoBASE ID}
• Identifier for the Escherichia coli 2-D gel gene-protein database {ECO2DBASE ID}
• Identifier for EcoGene, a database of Escherichia coli sequence and function {EcoGene ID}
• Identifiers for Ensembl {Ensembl*}
• Identifiers for FlyBase {FlyBase*}
• Identifier for the MIPS Functional Catalogue Database {FunCatDB ID}
• mRNA accession for the Entrez Nucleotide database at NCBI {GenBank Nucleotide Accession}
• protein accession for the NCBI protein sequence database {GenBank Protein Accession}
• Identifier for a gene as assigned by the Entrez gene project {Gene ID *}
• Identifier for GeneDB, a database containing information on all genes and RNA's of Schizosaccharomyces pombe {GeneDB_Spombe ID}
• Identifier for GeneFarm, a database of structural and functional annotation of plant gene and protein families {GeneFarm ID}
• Identifier for Genome Reviews, a comprehensive annotated view of the genomic sequence of organisms with completely deciphered genomes {GenomeReviews ID}
• a numeric sequence identifer used at NCBI {GI Number}
• Identifier for gene ontology, a project which annotates genes and gene products {GO*}
• Gene Set Enrichment Analysis {GSEA*}
• Human-invitational Database, an integrated database of human genes and transcripts {H-Inv*}
• Identifier for High-quality Automated and Manual Annotation of microbial Proteomes(HAMAP) {HAMAP ID}
• Identifier for the Human Gene Nomenculature Committee {HGNC ID}
• Human Metabolome Database, a database about small molecule metabolites found in human body {HMDB Metabolite*}
• Identifier for HomoloGene, an automated detection system for homologs among the annotated genes of several eukaryotic genomes {HomoloGene ID*}
• Identifier for the Human Protein Atlas which shows expression and protein localization in human tissues, cancer cells and cell lines with the aid of immunohistochemistry images {HPA ID}
• Identifier for the Human Protein Reference Database {HPRD ID*}
• Identifier for Illumina microarrays {Illumina ID}
• Database of Immunoglobulin and T-cell receptor genes in IMGT (ImMunoGeneTics Information system) {IMGT/GENE-DB ID}
• Identifier for IntAct, a protein interaction database from the European Bioinformatics Institute {IntAct ID}
• Identifier for InterPro, a database of protein families, domains and functional sites {InterPro ID}
• Identifier for International Protein Index {IPI ID}
• Pathwy Identifier for Kyoto Encyclopedia of Genes and Genomes (KEGG) {KEGG Pathway ID*}
• Identifier for LegioList, a database for the analysis of Legionella pneumophilia genomes {LegioList ID}
• identifer for Leproma, a database for the analysis of Mycobacterium leprae genome {Leproma ID}
• Identifier for MaizeGDB, the Maize Genetics and Genomics Database {MaizeGDB ID}
• Identifier for MEROPS, database of peptidases and the proteins that inhibit them {MEROPS ID}
• reaction name/Identifier for MetaCyc, an encyclopedia of metabolic pathways {MetaCyc Reaction}
• Identifier for Mammalian Gene Collection, a trans-NIH inititaive providing access to full-length protein-coding cDNA clones. Also includes ZGC (Zebrafish Gene Collection) and XGC (Xenopus Gene Collection) {MGC(ZGC/XGC) ID*}
• Identifier for Mouse Genome Informatics {MGI ID}
• Identifier for the Mendelian Inheritance in Man, a catalog of human genes and genetic disorders {MIM ID}
• Identifier for the Molecular INTeraction database {MINT ID}
• Identifier for the miRNA sequences at miRBase {miRBase ID}
• Identifier to MultiFun, a classification system for cellular/physiological roles of E.coli gene products from GenProtEC {MultiFun ID}
• Pathway Interaction Database from NCI, containing curated information about known biomolecular interactions and key cellular processes assembled into signaling pathways {NCIPID*}
• Identifier for orphanet, a database of rare diseases and orphan drugs {Orphanet ID}
• Identifier for Protein ANalysis THrough Evolutionary Relationships, a resource that classifies genes by their functions {PANTHER ID}
• Identifier for the Poxvirus Bioinformatics Resource center {PBR ID}
• Identifier for Protein Data Bank, a repository of protein and nucleic-acid 3-D structures {PDB ID}
• Identifier for the peroxidase database {PeroxiBase ID}
• Identifier for Pfam, a database of protein families {Pfam ID}
• Identifier for the Pharmacogenetics and Pharmacogenomics Knowledge Base, an integrated resource about how human gentics variation leads to variation in response to drugs {PharmGKB ID*}
• Identifier for Protein Information Resource(PIR) {PIR ID}
• Identifier for PIRSF, a protein family classification system {PIRSF ID}
• Identifier for the Prokaryotic Protein Phosphatase Database {PptaseDB ID}
• Identifier for PRINTS, a database consisting of protein fingerprints {PRINTS ID}
• Identifier for ProDom, a database of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases {ProDom ID}
• Identifier for prosite, a database of protein domains, families and functional sites {PROSITE ID}
• Identifier for the Psuendomonas Genome Database {PseudoCAP ID}
• Identifier for PubChem, database of chemical structures of small organic molecules {PubChem ID}
• Identifier for PubMed, a search engine offering access to the MEDLINE database of citations and abstracts of biomedical research articles {PubMed ID}
• Identifier for Reactome, a curated knowledgebase of biological pathways {Reactome ID*}
• Identifier for the Restriction Enzyme Database {REBASE ID}
• genomic accession for RefSeq, a collection of comprehensive, integrated, non-redundant set of nucleotide and protein sequences {RefSeq Genomic Accession}
• RNA accession for RefSeq, a collection of comprehensive, integrated, non-redundant set of nucleotide and protein sequences {RefSeq *RNA Accession}
• protein accession for RefSeq, a collection of comprehensive, integrated, non-redundant set of nucleotide and protein sequences {RefSeq Protein Accession}
• Identifier for the RNA families database of alignments and covariance models {Rfam ID}
• Identifier for the Rat Genome Database {RGD ID}
• Identifier for Structural Classification of Proteins {SCOP ID}
• Identifier for Saccharomyces Genome Database (SGD) {SGD ID}
• Identifier for the Simple Modular Architecture Research Tool which allows the identification and annotation of genetically mobile domains and the analysis of domain architectures {SMART ID}
• Accessions for the keywords and categories used in UniProt {SP Keywords Accession}
• Protein Identifier for the interacting protein from STRING {STRING Protein Interactor}
• Identifier for The Arabidopsis Information Resource {TAIR ID}
• Identifier for the NCBI taxonomy database which contains the names of all organisms that are represented in the genetic databases with atleast one nucleotide or protein sequence {Taxon ID}
• The Identifier for the Transporter Classification Database {TCDB ID}
• The Identifier for the TIGR protein families {TIGRFAMs ID}
• Identifier for TubercuList, a database for the analysis of tubercle bacilli genomes {TubercuList ID}
• UCSC Identifier for known genes in human and mouse {UCSC ID}
• Identifier representing a unigene cluster, a set of transcript sequences that appear to come from the same transcription locus {UniGene ID*}
• Universal Protein Resource, a central repository of protein information from Swiss-Prot, TrEMBL and PIR {UniProt*}
• Sequence tagged sites (STSs) database Identifier {UniSTS ID}
• Identifier for the VectorBase, the NIAID Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens {VectorBase*}
• Identifiers for VEGA, the Vertebrate Genome Annotation Database {VEGA*}
• Identifiers for wormbase, databases on the Caenorhabditis elegans and related nematodes {WormBase*}
• Identifier for XenBase, the Xenopus laevis and Xenopus tropicalis biology and genomics resource {XenBase*}
• Identifier for ZFIN, the Zebrafish Model Organism Database {ZFIN ID}

Tips: '*' means have sub id